Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2012
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Kinetics of anaerobic elemental sulfur oxidation by ferric iron in Acidithiobacillus ferrooxidans and protein identification by comparative 2-DE-MS/MS
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, year: 2012, volume: 101, edition: 3, DOI
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NMR study of RNA polymerase delta subunit unique for gram-positive bacteria
Year: 2012
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Photoremovable Chiral Auxiliary
Photochemical & Photobiological Sciences, year: 2012, volume: 11, edition: 3, DOI
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Physiological and proteomic approaches to evaluate the role of sterol binding in elicitin-induced resistance
Journal of Experimental Botany, year: 2012, volume: 63, edition: 5, DOI
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Plant aminoaldehyde dehydrogenases oxidize a wide range of nitrogenous heterocyclic aldehydes
Amino Acids, year: 2012, volume: 43, edition: 3, DOI
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Problematic glycosyltransferase Rv3782 from Mycobacterium tuberculosis and its production in new expression system
Year: 2012, type: Conference abstract
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Radioiodine tracers as useful tools in studies of thyrotoxic effects of exogenous bromide and perchlorate ions
Journal of Radioanalytical and Nuclear Chemistry, year: 2012, volume: 291, edition: 2, DOI
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Rational Design and Synthesis of Optimized Glycoclusters for Multivalent Lectin-Carbohydrate Interactions: Influence of the Linker Arm
Chemistry - A European Journal, year: 2012, volume: 18, edition: 20, DOI
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Stoichiometry of bacterial anaerobic oxidation of elemental sulfur by ferric iron
Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, year: 2012, volume: 101, edition: 4, DOI
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Theoretical Description of Carbohydrate-Aromatic CH-pi Interactions Additive Properties via DFT and Ab Initio Calculations
Year: 2012, type: Conference abstract