Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2007
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The exosome and RNA quality control in the nucleus
EMBO REPORTS, year: 2007, volume: 8, edition: 7
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The mink as an animal model for Pseudomonas aeruginosa adhesion: binding of the bacterial lectins (PA-IL and PA-IIL) to neoglycoproteins and to sections of pancreas and lung tissues from healthy mink
Microbes and Infection, year: 2007, volume: 9, edition: 5
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The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction
EMBO REPORTS, year: 2007, volume: 8, edition: 4
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Theoretical study on structure, stability, and electronic properties of the guanine-Zn-cytosine base pair in M-DNA
JOURNAL OF PHYSICAL CHEMISTRY B, year: 2007, volume: 111, edition: 4
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TRITON: Graphic software for docking ligands to protein mutants
Modeling Interactions in Biomolecules III, book of abstracts, year: 2007
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Tryptophane as a Rotating Flap: Omega Loop Dynamics in Acetylcholinesterase
Year: 2007, type: Conference abstract
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UNRAVELING THE PROBLEMS OF PROTEIN - SACCHARIDE INTERACTIONS VIA COMPUTATIONAL CHEMISTRY
Materials structure, year: 2007, volume: 14, edition: 1
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UPS AND DOWNS OF HOMOLOGOUS RECOMBINATION
Year: 2007, type: R&D Presentation
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Utilizing Computational Chemistry for protein engineering - study of lectin-saccharide interactions
European Biophysics Journal 36 (suppl. 1), 6th EBSA Biophysics Congress, year: 2007
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Využití enzymů ve farmaceutických výrobách
Year: 2007, type: R&D Presentation