Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2007
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Structural basis of six bladed beta propeller lectins AAL and RSL
Materials and Structure in Chemistry, Biology,Physics and Technology, year: 2007
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Structure of Bombyx mori chemosensory protein 1 in solution
Archives of Insect Biochemistry and Physiology, year: 2007, volume: 66, edition: 3
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Strukturně funkční studie afinitních změn v lektin sacharidových systémech: počítačová chemie ve službách proteinového inženýrství
Chem. Listy 101, 425–465 (2007) - VII. Mezioborové setkání mladých biologů, biochemiků a chemiků, year: 2007
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Study of cryptogein recognition in plant defense reaction.
FEBS Journal, year: 2007
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Study of recombinant cytochrome P450 2C9 activity with diclofenac by micellar electrokinetic capillary chromatography
Electrophoresis, year: 2007, volume: 28, edition: 8
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Study of structure, dynamics and local elasticity of 16S rRNA Helix 44 using molecular dynamics methods.
Journal Of Biomolecular Structure and Dynamics, year: 2007
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Study of substrate inhibition by electrophoretically mediated microanalysis in partially filled capillary.
Journal of Chromatography A, year: 2007, volume: 1150, edition: 1-2
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Study of unusual RNA structures using molecular dynamics methods
Workshop on Modelling interactions in Biomolecules III, year: 2007
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Štúdium rannej fázy obrannej reakcie tabaku vyvolanej elicitínmi
Year: 2007, type: Conference abstract
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The application of MALDI MS whole-cell profiles of the genus Pseudomonas
Year: 2007, type: Conference abstract