Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2007
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Rhodaneses of Acidithiobacillus ferrooxidans - gaining protein from genom
International Congress of Young Chemists YoungChem 2007, year: 2007
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Rhodanese-type enzymes of bacterium Acidithiobacillus ferrooxidans
Bulletin Československé společnosti mikrobiologické, year: 2007, volume: 2007, edition: 48
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Ribosomal RNA motifs and segments have salient flexibilities
Journal Of Biomolecular Structure and Dynamics, year: 2007
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Serological Diagnosis of Tularemia in Mice Using the Amperometric Immunosensor
Electroanalysis, year: 2007, volume: 19, edition: 23
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Simultaneous determination of bromine and iodine in the rat thyroid by short-term INAA
Year: 2007, type: Conference abstract
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Simultaneous use of 82Br and 24Na radionuclides in the whole-body counting of animals by high-resolution gamma-ray spectrometry
Year: 2007, type: Conference abstract
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Speciace metaloproteinů - využití paralelně kombinovaných spektrometrických technik
Year: 2007, type: Conference abstract
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Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair
Biochemistry, year: 2007, volume: 46/2007, edition: 40
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Stepwise Dissection and Visualization of the Catalytic Mechanism of Haloalkane Dehalogenase LinB using Molecular Dynamics Simulations and Computer Graphics
JOURNAL OF MOLECULAR GRAPHICS AND MODELLING, year: 2007, volume: 26, edition: 3
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Stereoselektivita a konformační stabilita halogenalkan dehalogenázy DbjA z Bradyrhizobium japonicum USDA110,
Year: 2007, type: R&D Presentation