Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2005
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Construction of Cryptogein Mutants, a Proteinaceous Elicitor from Phytophthora, with Altered Abilities To Induce a Defense Reaction in Tobacco Cells
Biochemistry, year: 2005, volume: 44, edition: 17
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Determination of cyanide in microliter samples by CE using on-capillary enzymatic reaction with rhodanese
Proceeding of 29th Symposium on HPLC and Related Techniques, year: 2005
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Distribuované výpočty složitých stavových prostorů
Širokopásmové sítě a jejich aplikace, year: 2005
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DNA Binding and Strand Annealing Properties of the Human BRCA2 DNA Binding Domain
Era of Hope 2005 - Department of Defense Breast Cancer Research Program Meeting, year: 2005
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Dynamics of human CDK2 and CDK5 studied by computer simulations
Cellular and Molecular Biology Letters, year: 2005
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Dynamics of Protein-Pheromone Interactions:Temperature Dependent Spectral Density Mapping and Molecular Dynamics Simulations.
Magnetic Resonance in Physics, Chemistry, Biology, and Medicine, year: 2005
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Dynamika regulačních enzymů buněčných procesů CDK2 a CDK5 studovaná molekulovou dynamikou
ChemZi, year: 2005
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Electrochemical immunosensor for detection of Francisella tularensis
Defense against bioterror, edition: Vyd. 1, year: 2005, number of pages: 12 s.
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Elicitation od Defense reaction in Suspension Tobacco Cells by Elicitors from Armillaria
Folia microbiologica, year: 2005, volume: 50, edition: 2
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Energy coupling to nitrate uptake into the denitrifying cells of Paracoccus denitrificans
Biochimica et Biophysica Acta Bioenergetics, year: 2005, volume: 1709, edition: 2