Sequence:

Choose a recommended basic search pattern:

Moderately stringent Pattern
(generally best for mammals and yeast Transcription Factors)
[MDENQSTYG]{KRHCGP}[ILVFWM]{KRHCGP}{CGP}{CGP}[ILVFWM]{CGP}{CGP}

Most stringent Pattern
(best for most yeast Transcription Factors)
MDENQSTYG]{KRHCGP}[ILVFWM]{KRHCGP}{CGP}{KRHCGP}[ILVFWM][ILVFWMAY]{KRHC}

Less stringent Pattern
(best for viral, artificial and other Transcription Factors or short Transactivation Domains w/o suitable hits with stringent Patterns)
[MDENQSTYCPGA]X[ILVFWMAY]{KRHCGP}{CGP}{CGP}[ILVFWMAY]XX

Pattern for Clusters of less stringent DFx Repeats
(best for short Transactivation Domains w/o suitable hits with stringent Patterns)
XX[ILVFWMAY]{GP}{GP}[ILVFWMAY]{GP}XX

Custom:

Refinement criteria:

 Approved positions
 123456789
RC1min 1 x [ILVFWMAY]     
RC2min 1 x [ILVFWMAY]     
RC3min 1 x [DENQST]   
RC4min 2 - max 4 x [DENQSTKRH] 
RC5min 5 - max 7 x [ILVFWMAYGPST]    
RC6max 3 x [ILVFWMAYGP] in a row 
RC7max 2 x [DENQST] in a row 
RC8max 1 x [KRH] 
RC9max 1 x [QNKRH]  
RC10max 1 x [QNKRH]  
RC11any [C]   
 RC12   any [PG]   

 

Navigation: